This means that each table has its own unique identifier (primary key) and does not inherit it from the other table. Primary Foreign Key (PFK) - key which acts as primary key in more than one table which occurs in tables with an identifying relationship.Ī dashed line between tables indicates a non-identifying relationship.Alternate Keys (AK) - key associated with one or more columns whose values uniquely identify every row in the table, but which is not the primary key.Foreign keys (FK) - values match a primary or alternate key inherited from some other table.Primary key (PK) - value which uniquely identifies every row in the table.Required (NN = Not Null) or not required in the table (this may be different than methodologically required).Raise RuntimeError('Aborting due to error while executing step.Many types of information are shown in the data model diagrams: Please fix the problem and run this again to make sure study is completely loaded.įile "/home/jjeong/local/opt/cbioportal-2.2.0/cbioportal/core/src/main/scripts/importer/cbioportalImporter.py", line 447, in mainįile "/home/jjeong/local/opt/cbioportal-2.2.0/cbioportal/core/src/main/scripts/importer/cbioportalImporter.py", line 164, in check_versionįile "/home/jjeong/local/opt/cbioportal-2.2.0/cbioportal/core/src/main/scripts/importer/cbioportal_common.py", line 845, in run_java Run the database migration script located at CBIOPORTAL_SRC/core/src/main/scripts/migrate_db.py before continuing. Java.io.FileNotFoundException: /cbioportal.log (Permission denied)Īt java.io.FileOutputStream.open0(Native Method)Īt java.io.FileOutputStream.open(FileOutputStream.java:270)Īt java.io.FileOutputStream.(FileOutputStream.java:213)Īt java.io.FileOutputStream.(FileOutputStream.java:133)Īt .setFile(FileAppender.java:294)Īt .activateOptions(FileAppender.java:165)Īt .RollingFileAppender.activateOptions(RollingFileAppender.java:179)Īt .PropertySetter.activate(PropertySetter.java:307)Īt .tProperties(PropertySetter.java:172)Īt .tProperties(PropertySetter.java:104)Īt 圜onfigurator.parseAppender(Propert圜onfigurator.java:809)Īt 圜onfigurator.parseCategory(Propert圜onfigurator.java:735)Īt 圜nfigureRootCategory(Propert圜onfigurator.java:615)Īt 圜onfigurator.doConfigure(Propert圜onfigurator.java:502)Īt 圜onfigurator.doConfigure(Propert圜onfigurator.java:547)Īt .lectAndConfigure(OptionConverter.java:483)Īt .(LogManager.java:127)Īt .getLogger(Logger.java:104)Īt .(Log4JLogger.java:262)Īt .impl.Log4JLogger.(Log4JLogger.java:108)Īt 0(Native Method)Īt (NativeConstructorAccessorImpl.java:62)Īt (DelegatingConstructorAccessorImpl.java:45)Īt .newInstance(Constructor.java:423)Īt .(LogFactoryImpl.java:1025)Īt .(LogFactoryImpl.java:844)Īt .(LogFactoryImpl.java:541)Īt .(LogFactoryImpl.java:292)Īt .(LogFactoryImpl.java:269)Īt .LogFactory.getLog(LogFactory.java:655)Īt .dao.JdbcUtil.(JdbcUtil.java:51)Īt .(DaoInfo.java:56)Īt .(DaoInfo.java:83)Īt .(VersionUtil.java:41)Ĭhecked DB schema version: (expected: 2.8.2) (found: 2.7.3)Įrror, probably due to this version of the portal being out of sync with the database. Log4j:ERROR setFile(null,true) call failed. Importing study nowĭata loading step using /home/jjeong/local/opt/cbioportal-2.2.0/cbioportal/scripts/target/scripts-2.2.0-17-g1f2c6beb8-dirty-SNAPSHOT.jar
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